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Publications

Npj viruses. 2025-10-02; 3.1: 72.
Impact of naturally occurring hemagglutinin substitutions on antigenicity and fitness of influenza A(H5N1) virus
Wang L, Hatta M, Feng C, Carney P, Almanzar-Jordan MR, Wang J, Hossain J, Atteberry G, Assad-Garcia N, Sheffield S, DaSilva J, De La Cruz JA, Hatta Y, Johnson MC, Frederick J, Hart R, Lacek KA, Wilson M, Keong LM, Lin X, Huang Y, Currier M, Tan G, Vashee S, Dugan VG, Rambo-Martin B, Di H, Kirby MK, Davis CT, Stevens J, Zhou B
PMID: 41034380
Cell. 2025-10-02; 188.20: 5653-5665.e12.
Highly conserved Betacoronavirus sequences are broadly recognized by human T cells
Pereira Neto TA, Zmasek C, Avalos L, Sidney J, Trevizani R, Phillips E, Mallal S, Frazier A, Tan GS, Scheuermann RH, Sette A, Grifoni A
PMID: 40774254
Nature. 2025-10-01; 646.8083: 180-189.
mAChR4 suppresses liver disease via GAP-induced antimicrobial immunity
Llorente C, Raya Tonetti F, Bruellman R, Brea R, Pell N, Hartmann P, Maccioni L, Han H, Cabré N, Liu J, Eguileor A, Fondevila MF, Meijnikman AS, Hsu CL, Alghafri A, Zhou R, Gao B, Duan Y, Zhang P, Febbraio MA, Taniguchi K, Newberry RD, Fouts DE, Brenner DA, Stärkel P, Karin M, Schnabl B
PMID: 40836099
The Journal of infectious diseases. 2025-09-30;
Blood cultures contain populations of genetically diverse Candida albicans strains that may differ in echinocandin tolerance and fitness
Fleres G, Cheng S, Badrane H, Dupont CL, Espinoza JL, Abbey D, Driscoll E, Newbrough A, Hao B, Mansour A, Nguyen MH, Clancy CJ
PMID: 41026105
Genome medicine. 2025-09-29; 17.1: 106.
Distinct patterns of genetic overlap among multimorbidities revealed with trivariate MiXeR
Shadrin AA, Hindley G, Hagen E, Parker N, Tesfaye M, Jaholkowski P, Rahman Z, Kutrolli G, Fominykh V, Djurovic S, Smeland OB, O'Connell KS, van der Meer D, Frei O, Andreassen OA, Dale AM
PMID: 41023670
Nature communications. 2025-09-29; 16.1: 8559.
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae
Füssy Z, Lampe RH, Arrigo KR, Barry K, Brisbin MM, Brussaard CPD, Decelle J, de Vargas C, Ditullio GR, Elbourne LDH, Frischer ME, Goodstein DM, Grigoriev IV, Hayes RD, Healey AL, James CC, Jenkins JW, Juery C, Kumar M, Kustka AB, Maumus F, Novák Vanclová AMG, Oborník M, Paulsen IT, Probert I, Saito MA, Schmutz J, Skalický T, Tec-Campos D, Tomelka H, Věchtová P, Venepally P, Wilson-Mortier B, Zengler K, Zheng H, Allen AE
PMID: 41022706
Journal of fungi (Basel, Switzerland). 2025-08-19; 11.8:
Development of a Mouse Model of Coccidioidomycosis Using an Inhalation Exposure System
Erlich JR, Rodriguez P, Yau KPS, Tate M, Carlin AF, Fierer J, Kirkland TN, Hoffman HM, Beyhan S, Croker BA
PMID: 40863551
Metabolic engineering. 2025-07-11; 92.22-38.
Establishing Vibrio natriegens as a high-performance host for acetate-based poly-3-hydroxybutyrate production
Politan RJ, Della Valle S, Pineda L, Joshi J, Euler C, Flematti G, Fritz G
PMID: 40653003
Science (New York, N.Y.). 2025-07-10; 389.6756: 176-182.
Overturning circulation structures the microbial functional seascape of the South Pacific
Kolody BC, Sachdeva R, Zheng H, Füssy Z, Tsang E, Sonnerup RE, Purkey SG, Allen EE, Banfield JF, Allen AE
PMID: 40638745
Microbiology resource announcements. 2025-07-10; 14.7: e0029825.
Marine microbial mock communities for validating rRNA gene amplicon sequencing
Lampe RH, Rabines AJ, Ellman BA, Zheng H, Allen AE
PMID: 40444952