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Publications

Harmful algae. 2026-01-01; 151.103024.
A digital PCR assay for the dabA gene involved in domoic acid biosynthesis by Pseudo-nitzschia spp
Weinstock C, Preston C, Brunson JK, Ussler W, Bowers H, Yamahara K, Doucette G, Ryan J, Allen A, Scholin C, Birch J
PMID: 41350003
BMC microbiology. 2025-12-12; 26.1: 34.
Environmental and skin-nasal microbiome variation in South African children with atopic dermatitis
Chen Y, Nguyen AD, Lunjani N, Ndhlovu G, Kaul D, De Pessemier B, Nakatsuji T, Madzinga M, Sovershaeva E, Hlela C, Levin M, Mankahla A, Hightower G, Callewaert C, Knight R, Gallo RL, Dupont CL, Dube F
PMID: 41388368
mBio. 2025-12-10; 16.12: e0207925.
Domoic acid biosynthesis and genome expansion in <i>Nitzschia navis-varingica</i>
Wood-Rocca SM, Allsing N, Ashida Y, Mochizuki M, Moore ML, Füssy Z, Kotaki Y, Puilingi C, Maeno Y, Beattie AW, Allen AE, Yotsu-Yamashita M, Michael TP, Moore BS
PMID: 41165336
Journal of phycology. 2025-12-01; 61.6: 1591-1600.
An undescribed species within the Gymnodinium sensu stricto group found responsible for an exceptional bloom in the Southern Ocean
Mascioni M, Cusick A, Sanchez-Puerta MV, Johnson C, Zheng H, Reynolds RA, Allen AE, Almandoz GO
PMID: 41014142
Nature neuroscience. 2025-12-01; 28.12: 2439-2450.
A genome-wide analysis of the shared genetic risk architecture of complex neurological and psychiatric disorders
Smeland OB, Kutrolli G, Bahrami S, Fominykh V, Parker N, Fuhrer J, Hindley GFL, Rødevand L, Jaholkowski P, Tesfaye M, Parekh P, Elvsåshagen T, Grotzinger AD, Steen NE, van der Meer D, O'Connell KS, Djurovic S, Dale AM, Shadrin AA, Frei O, Andreassen OA
PMID: 41219506
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology. 2025-12-01; 33.1: 29.
Rapid assembly of functional modules for generating human artificial chromosome constructs compatible with epigenetic centromere seeding
Birchak GJ, Gibson DG, Allu PK, Kashyap P, Glass JI, Black BE
PMID: 41324764
Technical innovations & patient support in radiation oncology. 2025-12-01; 36.100353.
PrecisionPro Fusion: Clinical validation of an automated, rigid, Prostate-Specific MRI-CT Fusion system for prostate radiotherapy planning
Do D, Conlin C, Baxter M, Christodouleas J, Dess R, Dragojevic I, Harisinghani M, Kamran S, Moiseenko V, Nagar H, Nakrour N, Nguyen L, Rupareliya R, Seyedin S, Song Y, Dale AM, Seibert TM
PMID: 41322076
Nucleic acids research. 2025-11-18;
BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration
Shukla M, Wattam AR, Aleman A, Bhattacharya R, Bowers N, Brettin T, Capria A, Chia N, Cucinell C, Davis JJ, Dempsey DM, Dickerman A, Dietrich EM, Gokdemir O, Hendrickson RC, Kenyon RW, Klahn B, Kuscuoglu M, Lefkowitz EJ, Ma H, Machi D, Macken C, Mann CM, Mao C, Nguyen M, Olsen GJ, Olson RD, Overbeek R, Owens SM, Parrello B, Poretsky R, Pusch GD, Ramanathan A, Sheriff JT, Singh I, Stewart L, VanOeffelen M, Vonstein V, Warren AS, Wilke A, Zmasek CM, Zuniga A, Stevens RL
PMID: 41251138
The Journal of infectious diseases. 2025-11-14; 232.5: 1097-1107.
Escherichia coli Type III Secretion System 2 Is Associated With Patient Mortality in Bloodstream Infections
Thaden JT, Cox P, Ankrah PK, Khandelwal S, Bourgeois JS, Poteete O, Ruffin F, Arepally G, Sutton G, Brinkac L, Clarke TH, Ko DC, Fouts DE, Fowler VG
PMID: 40404560
mBio. 2025-11-12; 16.11: e0198825.
Integrating genomic and Tn-Seq data to identify common <i>in vivo</i> fitness mechanisms across multiple bacterial species
Fouts DE, Clarke TH, Severin GB, Brown AN, Ottosen EN, Holmes CL, Moricz BS, Mason S, Sinha R, Anderson MT, DiRita V, Bachman MA, Mobley HLT
PMID: 40981419