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Publications

Proceedings of the National Academy of Sciences of the United States of America. 2012-04-17; 109.16: 6036-41.
The costimulatory immunogen LPS induces the B-Cell clones that infiltrate transplanted human kidneys
Grover RK, Cheng J, Peng Y, Jones TM, Ruiz DI, Ulevitch RJ, Glass JI, Dennis EA, Salomon DR, Lerner RA
PMID: 22492977
Journal of biotechnology. 2012-04-15; 158.3: 144-50.
Triallelic SNP-mediated genotyping of regenerated protoplasts of the heterokaryotic fungus Rhizoctonia solani
Thomas E, Pakala S, Fedorova ND, Nierman WC, Cubeta MA
PMID: 22321572
BMC genomics. 2012-04-05; 13.131.
VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data
Peterson ES, McCue LA, Schrimpe-Rutledge AC, Jensen JL, Walker H, Kobold MA, Webb SR, Payne SH, Ansong C, Adkins JN, Cannon WR, Webb-Robertson BJ
PMID: 22480257
Journal of bacteriology. 2012-04-01; 194.8: 2121-2.
Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary
Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA
PMID: 22461555
Journal of bacteriology. 2012-04-01; 194.8: 2119-20.
Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary
Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA
PMID: 22461554
Genetics. 2012-04-01; 190.4: 1563-74.
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy
Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC
PMID: 22308264
Nature methods. 2012-04-01; 9.4: 345-50.
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Brinkman F, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hancock R, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stümpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H
PMID: 22453911
Journal of bacteriology. 2012-04-01; 194.8: 1885-96.
Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage
Kyle JL, Cummings CA, Parker CT, Quiñones B, Vatta P, Newton E, Huynh S, Swimley M, Degoricija L, Barker M, Fontanoz S, Nguyen K, Patel R, Fang R, Tebbs R, Petrauskene O, Furtado M, Mandrell RE
PMID: 22328665
BMC bioinformatics. 2012-03-19; 13.42.
Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community
Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, Nelson KE
PMID: 22429538
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2012-03-01; 124.4: 685-95.
Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava
Ferguson ME, Hearne SJ, Close TJ, Wanamaker S, Moskal WA, Town CD, de Young J, Marri PR, Rabbi IY, de Villiers EP
PMID: 22069119