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Publications

PloS one. 2013-01-01; 8.6: e67155.
A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection
Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN
PMID: 23840608
PloS one. 2013-01-01; 8.5: e67616.
Asparagine substitution at PB2 residue 701 enhances the replication, pathogenicity, and transmission of the 2009 pandemic H1N1 influenza A virus
Zhou B, Pearce MB, Li Y, Wang J, Mason RJ, Tumpey TM, Wentworth DE
PMID: 23799150
PLoS pathogens. 2013-01-01; 9.6: e1003481.
Host factor SAMHD1 restricts DNA viruses in non-dividing myeloid cells
Hollenbaugh JA, Gee P, Baker J, Daly MB, Amie SM, Tate J, Kasai N, Kanemura Y, Kim DH, Ward BM, Koyanagi Y, Kim B
PMID: 23825958
PloS one. 2013-01-01; 8.12: e62216.
Improved method for linear B-cell epitope prediction using antigen's primary sequence
Singh H, Ansari HR, Raghava GP
PMID: 23667458
Nature communications. 2013-01-01; 4.1601.
A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer
Ishii S, Suzuki S, Norden-Krichmar TM, Tenney A, Chain PS, Scholz MB, Nealson KH, Bretschger O
PMID: 23511466
PloS one. 2013-01-01; 8.12: e57182.
investigating acid production by Streptococcus mutans with a surface-displayed pH-sensitive green fluorescent protein
Guo L, Hu W, He X, Lux R, McLean J, Shi W
PMID: 23468929
Journal of visualized experiments : JoVE. 2012-12-15; 70: e4072.
The green monster process for the generation of yeast strains carrying multiple gene deletions
Suzuki Y, Stam J, Novotny M, Yachie N, Lasken RS, Roth FP
PMID: 23271437
BMC genomics. 2012-12-12; 13.698.
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability
Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, Denning DW, Nierman WC
PMID: 23234273
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2012-12-01; 25.12: 1599-608.
Global mutational profiling of formalin-fixed human colon cancers from a pathology archive
Adams MD, Veigl ML, Wang Z, Molyneux N, Sun S, Guda K, Yu X, Markowitz SD, Willis J
PMID: 22878650
Nucleic acids research. 2012-12-01; 40.22: e172.
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species
Fouts DE, Brinkac L, Beck E, Inman J, Sutton G
PMID: 22904089