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Publications

Nucleic acids research. 2017-01-04; 45.D1: D190-D199.
InterPro in 2017-beyond protein family and domain annotations
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL
PMID: 27899635
PeerJ. 2017-01-03; 5.e2733.
Comparative analysis of the Rotarixâ„¢ vaccine strain and G1P[8] rotaviruses detected before and after vaccine introduction in Belgium
Zeller M, Heylen E, Tamim S, McAllen JK, Kirkness EF, Akopov A, De Coster S, Van Ranst M, Matthijnssens J
PMID: 28070453
Methods in molecular biology (Clifton, N.J.). 2017-01-01; 1620.359-366.
Facile Site-Directed Mutagenesis of Large Constructs Using Gibson Isothermal DNA Assembly
Yonemoto IT, Weyman PD
PMID: 27709588
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2017-01-01; 22.564-575.
PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX
Aevermann B, McCorrison J, Venepally P, Hodge R, Bakken T, Miller J, Novotny M, Tran DN, Diezfuertes F, Christiansen L, Zhang F, Steemers F, Lasken RS, Lein ED, Schork N, Scheuermann RH
PMID: 27897007
The ISME journal. 2017-01-01; 11.1: 201-211.
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO
PMID: 27392085
Methods in molecular biology (Clifton, N.J.). 2017-01-01; 1620.225-248.
Harnessing the Power of PCR Molecular Fingerprinting Methods and Next Generation Sequencing for Understanding Structure and Function in Microbial Communities
Phadke S, Salvador AF, Alves JI, Bretschger O, Alves MM, Pereira MA
PMID: 28540712
PloS one. 2017-01-01; 12.6: e0171758.
A comprehensive software suite for protein family construction and functional site prediction
Haft DR, Haft DH
PMID: 28182651
PloS one. 2017-01-01; 12.12: e0188071.
Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions
Wallqvist A, Wang H, Zavaljevski N, Memišević V, Kwon K, Pieper R, Rajagopala SV, Reifman J
PMID: 29176882
mSystems. 2017-01-01; 2.1:
Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels
Levering J, Dupont CL, Allen AE, Palsson BO, Zengler K
PMID: 28217746
Frontiers in immunology. 2017-01-01; 8.1593.
Retroviruses As Myeloid Cell Riders: What Natural Human Siglec-1 "Knockouts" Tell Us СÀ¶¾ãÀÖ²¿ Pathogenesis
Martinez-Picado J, McLaren PJ, Telenti A, Izquierdo-Useros N
PMID: 29209326