Publications

Scientific reports. 2024-09-28; 14.1: 22408.

Endemic, cosmopolitan, and generalist taxa and their habitat affinities within a coastal marine microbiome

James CC, Allen AE, Lampe RH, Rabines A, Barton AD

PMID: 39333653

Molecular therapy. Nucleic acids. 2024-09-10; 35.3: 102249.

Harnessing mRNA to unleash endolysins: A new frontier in antibacterial therapy

Nelson DC, Dave UM, Gonzalez-Juarbe N

PMID: 39040502

PLoS pathogens. 2024-08-23; 20.8: e1012495.

Fitness factor genes conserved within the multi-species core genome of Gram-negative Enterobacterales species contribute to bacteremia pathogenesis

Mobley HLT, Anderson MT, Moricz BS, Severin GB, Holmes CL, Ottosen EN, Eichler T, Gupta S, Paudel S, Sinha R, Mason S, Himpsl SD, Brown AN, Gaca M, Kiser CM, Clarke TH, Fouts DE, DiRita VJ, Bachman MA

PMID: 39178317

Applied and environmental microbiology. 2024-08-21; 90.8: e0108324.

Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant

Pe帽a-Montenegro TD, Kleindienst S, Allen AE, Eren AM, McCrow JP, Arnold J, Joye SB

PMID: 39041797

mBio. 2024-08-14; 15.8: e0003824.

Marine bacteria <i>Alteromonas</i> spp. require UDP-glucose-4-epimerase for aggregation and production of sticky exopolymer

Robertson JM, Garza EA, Stubbusch AKM, Dupont CL, Hwa T, Held NA

PMID: 38958440

Nucleic acids research. 2024-08-12; 52.14: e63.

Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic聽and viral multi-omics from either short- or long-read sequencing

Espinoza JL, Phillips A, Prentice MB, Tan GS, Kamath PL, Lloyd KG, Dupont CL

PMID: 38909293

Frontiers in public health. 2024-08-09; 12.1399731.

Whole-genome sequencing-based genetic diversity, transmission dynamics, and drug-resistant mutations in <i>Mycobacterium tuberculosis</i> isolated from extrapulmonary tuberculosis patients in western Ethiopia

Chekesa B, Singh H, Gonzalez-Juarbe N, Vashee S, Wiscovitch-Russo R, Dupont CL, Girma M, Kerro O, Gumi B, Ameni G

PMID: 39185123

PloS one. 2024-07-29; 19.7: e0307968.

Serum susceptibility of Escherichia coli and its association with patient clinical outcomes

Poteete O, Cox P, Ruffin F, Sutton G, Brinkac L, Clarke TH, Fouts DE, Fowler VG, Thaden JT

PMID: 39074102

PloS one. 2024-07-25; 19.7: e0304060.

Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia

Chekesa B, Singh H, Gonzalez-Juarbe N, Vashee S, Wiscovitch-Russo R, Dupont CL, Girma M, Kerro O, Gumi B, Ameni G

PMID: 39052555

PloS one. 2024-07-25; 19.7: e0300408.

Sputum production and salivary microbiome in COVID-19 patients reveals oral-lung axis

Lu KY, Alqaderi H, Bin Hasan S, Alhazmi H, Alghounaim M, Devarajan S, Freire M, Altabtbaei K

PMID: 39052548

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