Publications

Journal of computational biology : a journal of computational molecular cell biology. 2005-06-01; 12.5: 497-513.

A tool for analyzing mate pairs in assemblies (TAMPA)

Dew IM, Walenz B, Sutton G

PMID: 15952874

Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2005-05-20; 23.15: 3526-35.

Molecular staging for survival prediction of colorectal cancer patients

Eschrich S, Yang I, Bloom G, Kwong KY, Boulware D, Cantor A, Coppola D, Kruh酶ffer M, Aaltonen L, Orntoft TF, Quackenbush J, Yeatman TJ

PMID: 15908663

Proceedings of the National Academy of Sciences of the United States of America. 2005-05-17; 102.20: 7315-20.

Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella

Schmidt EW, Nelson JT, Rasko DA, Sudek S, Eisen JA, Haygood MG, Ravel J

PMID: 15883371

Bioinformatics (Oxford, England). 2005-05-01; 21.9: 1782-8.

Efficient implementation of a generalized pair hidden Markov model for comparative gene finding

Majoros WH, Pertea M, Salzberg SL

PMID: 15691859

Plant physiology. 2005-05-01; 138.1: 18-26.

The institute for genomic research Osa1 rice genome annotation database

Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR

PMID: 15888674

Applied and environmental microbiology. 2005-05-01; 71.5: 2530-8.

DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens

Meth茅 BA, Webster J, Nevin K, Butler J, Lovley DR

PMID: 15870343

Nature methods. 2005-05-01; 2.5: 345-50.

Multiple-laboratory comparison of microarray platforms

Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Mart铆nez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W

PMID: 15846361

Medical mycology. 2005-05-01; 43 Suppl 1.S313-9.

The ergosterol biosynthesis pathway, transporter genes, and azole resistance in Aspergillus fumigatus

Ferreira ME, Colombo AL, Paulsen I, Ren Q, Wortman J, Huang J, Goldman MH, Goldman GH

PMID: 16110826

International journal of systematic and evolutionary microbiology. 2005-05-01; 55.Pt 3: 1021-6.

Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales

Badger JH, Eisen JA, Ward NL

PMID: 15879228

Nature methods. 2005-05-01; 2.5: 351-6.

Standardizing global gene expression analysis between laboratories and across platforms

Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H, Members of the Toxicogenomics Research Consortium

PMID: 15846362

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