Publications

BMC bioinformatics. 2013-05-13; 14.158.

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G

PMID: 23668630

BMC research notes. 2013-05-03; 6.177.

Rapid research response to the 2009 A(H1N1)pdm09 influenza pandemic (Revised)

Keitel WA, Piedra PA, Atmar RL, Demmler G, El Sahly HM, Barrett J, Halpin RA, Lagos R, Fisher-Hoch S, Munoz F

PMID: 23641940

Applied and environmental microbiology. 2013-05-01; 79.9: 2932-43.

Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park

Romano C, D'Imperio S, Woyke T, Mavromatis K, Lasken R, Shock EL, McDermott TR

PMID: 23435891

Antimicrobial agents and chemotherapy. 2013-05-01; 57.5: 2243-51.

Mutational activation of the AmgRS two-component system in aminoglycoside-resistant Pseudomonas aeruginosa

Lau CH, Fraud S, Jones M, Peterson SN, Poole K

PMID: 23459488

Nature methods. 2013-05-01; 10.5: 410-2.

Direct transfer of whole genomes from bacteria to yeast

Karas BJ, Jablanovic J, Sun L, Ma L, Goldgof GM, Stam J, Ramon A, Manary MJ, Winzeler EA, Venter JC, Weyman PD, Gibson DG, Glass JI, Hutchison CA, Smith HO, Suzuki Y

PMID: 23542886

Genome research. 2013-05-01; 23.5: 867-77.

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS

PMID: 23564253

Microbial ecology. 2013-05-01; 65.4: 916-9.

Microbiomes

Nelson KE

PMID: 23604403

Genome research. 2013-05-01; 23.5: 878-88.

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS

PMID: 23493677

Environmental microbiology. 2013-05-01; 15.5: 1318-33.

Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics

Wilkins D, Lauro FM, Williams TJ, DeMaere MZ, Brown MV, Hoffman JM, Andrews-Pfannkoch C, McQuaid JB, Riddle MJ, Rintoul SR, Cavicchioli R

PMID: 23199136

Genome research. 2013-05-01; 23.5: 826-32.

Sequencing of isolated sperm cells for direct haplotyping of a human genome

Kirkness EF, Grindberg RV, Yee-Greenbaum J, Marshall CR, Scherer SW, Lasken RS, Venter JC

PMID: 23282328

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