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Publications

Proceedings of the National Academy of Sciences of the United States of America. 2015-01-27; 112.4: 1173-8.
Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean
Santoro AE, Dupont CL, Richter RA, Craig MT, Carini P, McIlvin MR, Yang Y, Orsi WD, Moran DM, Saito MA
PMID: 25587132
Genome announcements. 2015-01-22; 3.1:
Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains
Hupfeld M, Fouts DE, Loessner MJ, Klumpp J
PMID: 25614561
PLoS biology. 2015-01-20; 13.1: e1002050.
Where next for microbiome research?
Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H
PMID: 25602283
International journal of molecular sciences. 2015-01-16; 16.1: 2020-33.
Designed surface residue substitutions in [NiFe] hydrogenase that improve electron transfer characteristics
Yonemoto IT, Smith HO, Weyman PD
PMID: 25603181
eLife. 2015-01-16; 4.e05055.
The contrasting phylodynamics of human influenza B viruses
Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YC, Halpin R, Lee RT, Deng YM, Gunalan V, Lin X, Stockwell TB, Fedorova NB, Zhou B, Spirason N, Kühnert D, Bošková V, Stadler T, Costa AM, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth DE, Smith GJ, Barr IG
PMID: 25594904
Proceedings of the National Academy of Sciences of the United States of America. 2015-01-06; 112.1: 244-9.
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
He X, McLean JS, Edlund A, Yooseph S, Hall AP, Liu SY, Dorrestein PC, Esquenazi E, Hunter RC, Cheng G, Nelson KE, Lux R, Shi W
PMID: 25535390
Advances in experimental medicine and biology. 2015-01-01; 883.187-214.
Mapping the Protein-Protein Interactome Networks Using Yeast Two-Hybrid Screens
Rajagopala SV
PMID: 26621469
Methods in molecular biology (Clifton, N.J.). 2015-01-01; 1295.65-74.
Urinary pellet sample preparation for shotgun proteomic analysis of microbial infection and host-pathogen interactions
Yu Y, Pieper R
PMID: 25820714
Methods in molecular biology (Clifton, N.J.). 2015-01-01; 1275.103-15.
Degenerate primer design for highly variable genomes
Li K, Shrivastava S, Stockwell TB
PMID: 25697654
PloS one. 2015-01-01; 10.9: e0139355.
Weighted Score Tests Implementing Model-Averaging Schemes in Detection of Rare Variants in Case-Control Studies
Coombes B, Basu S, Guha S, Schork N
PMID: 26436424